Molecular Characteristics and Adhesion Activity of a Novel Protein ADP1 of Arthrobotrys oligospora to Nematodes

 

Li Jie1†, Chen Shuangqing1†, Li Zhiyuan1†, Wang Lixia1, Shang Yunxia1, Gong Shasha1, Xiao Chencheng1, Zhang Kai1, Zhang Xingxing2, Cai Xuepeng3, Qiao Jun1 and Meng Qingling1*

1College of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang, 832003, P. R. China

2Institute of Animal Science and Veterinary Research, Xinjiang Academy of Agricultural and Reclamation Science, Shihezi, Xinjiang, 832003, P. R. China

3State Key Lab of Veterinary Etiological Biology, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, Gansu, 730046, P. R. China

*For correspondence: xjmqlqj@sina.com

Contributed equally to this work and are co-first authors

Received 15 October 2020; Accepted 02 March 2021; Published 10 May 2021

 

Abstract

 

Adhesion is a crucial step for nematode-trapping fungi (NTF) predating nematodes. To investigate the function of a novel protein ADP1 in nematode-trapping process, ADP1 gene of a representative NTF-Arthrobotrys oligospora was cloned and the molecular characteristics of this protein were analyzed. Then, the GFP chimeric ADP1 (ADP1-GFP) was generated in a GFP expression vector and expressed in Escherichia coli BL21 (DE3) and the recombinant ADP1-GFP (reADP1-GFP) was purified. Incubation of reADP1-GFP with J3 larvae of Caenorhabditis elegans and Haemonchus contortus showed that reADP1-GFP could adhere nematodes with the strongest adhesion ability at 25°C, while the reADP1-GFP treated by trypsin completely lost the adhesion ability. Furthermore, the numbers of captured nematodes of A. oligospora treated by anti-reADP1-GFP serum in the experimental group was significantly lower than that in the control group, which suggests that the nematode-trapping activity of A. oligospora is inhibited by anti-ADP1 serum. To the best of our knowledge, this is the first report confirming that ADP1 from A. oligospora can modulate the adherence to C. elegans and H. contortus. The exploration of interaction between ADP1 protein of A. oligospora and nematodes provides new insights into the process of invasion and molecular mechanisms of A. oligospora preying nematode. © 2021 Friends Science Publishers

 

Keywords: Arthrobotrys oligospora; Adhesion protein; Fusion protein; ADP1-nematode interactions

 


Introduction

 

Gastrointestinal nematode disease of livestocks is parasitic disease seriously threatening the development of livestock industry and annually causing huge economic losses (Sréter et al. 1994; Tembely et al. 1997; Kaewthamasorn and Wongsamee 2006; Terrill et al. 2012). Currently, the disease is mainly prevented and controlled by chemical drugs. However, long-term use of these chemical drugs at high dosage has drawbacks (drug resistance, drug residues and environmental pollution) and becomes an increasingly prominent issue (Hay et al. 1997; Alvarez et al. 2008). Therefore, it is necessary to seek animal- and environment-friendly prevention and control methods. Using nematode predators-nematode-trapping fungi (NTF) to achieve the goal is considered as a prospective biological method (Grønvold et al. 1993; Gives and Vazquez-Prats 1994; Bird and Herd 1995; Chandrawathani et al. 1998; Fernández et al. 1999; Flores-Crespo et al. 2003).

NTF, are class fungi of more than 700 species that are able to prey, parasite or colonize nematodes. As the natural nematode predators, NTF can produce predatory organs to capture nematodes, most of their preying processes include identification, attraction, adhesion and degradation (Nordbring-Hertz et al. 2006), among which, adhesion is the most important step for preying nematodes. However, so far, the underlying molecular mechanisms of NTF preying nematodes are still incompletely understood (Liang et al. 2013; Andersson et al. 2014; Liu et al. 2014).

In recent years, the genomes of a number of NTF have been successfully sequenced and their genes related to predation have been studied in depth (Liu et al. 2018; Liang et al. 2013). As a representative of predatory fungi of nematode species, the genome of Arthrobotrys oligospora was first sequenced in 2011. Based on the results, Yang et al. (2011) predicated 17 adhesion-related protein-coding genes and found by qPCR that one of the predicted proteins, named ADP1, was upregulated by 21.7-fold during their predatory organ formation, suggesting that ADP1 may play an important role in the process of A. oligospora trapping nematode (Yang et al. 2011). However, the molecular characteristics and function of ADP1 of A. oligospora is still uncovered. The aim of this study is to analyze the molecular characteristic of a novel ADP1 protein of A. oligospora, and to explore the roles of ADP1 protein in the process of nematode-trapping, thus understanding the biological function of ADP1 of A. oligospora in invading nematodes.

 

Materials and Methods

 

Amplification of ADP1 gene of A. oligospora

 

Based on the full-length A. oligospora ADP1 gene sequence with accession number AOL_s00210g23 in GenBank published by Yang et al. (2011), a pair of ADP1 specific primer P1 and P2 was designed. After cultured in liquid LMZ medium (Tiangen, China) at 26°C with shaking at 150 rpm for 3 d, A. oligospora XJ-A1 strain was collected and its total RNA was extracted using Trizol (Invitrogen, USA) and reversely transcripted into cDNA using PrimeScriptTM reagent kit (Takara, Japan). The cDNA was then used as the template to amplify ADP1 gene at PCR reaction conditions of 95°C for 5 min followed by 30 cycles of 40 s at 94°C, 40s at 64°C and 1 min at 72 and final 10 min at 72°C.

 

Cloning of ADP1 gene from A. oligospora

 

The obtained ADP1 gene was recovered using Agarose Gel DNA Fragment Recovery Kit (Takara, Japan) and cloned into pMD18-T vector (Takara, Japan). The correct clones were identified by PCR and digestion with EcoRI and BamHI and further verified by sequencing (BGI, Shenzhen). Four positive clones were sequenced and compared with A. oligospora ADP1 gene sequence in GenBank.

 

Analysis of molecular characteristics of ADP1 protein of A. oligospora

 

The amino acid sequence of ADP1 was deduced, and its signal peptide was analyzed by software SignalP 4.1 (https://www.cbs.dtu.dk/services/SignalP/). The transmembrane and domains of this protein were predicted by TMHMM 2.0 and Scanprosite software (https://www.expasr.org/), respectively. Moreover, the secondary and tertiary structures were also predicted by Software Sopma and Swiss-model (https://www.expasr.org/), respectively.

 

Expression and purification of recombinant protein ADP1-GFP

 

The obtained plasmid pT-ADP1 and the expression vector pET28a-GFP were digested with restriction enzymes EcoRI and Hind III, respectively, and the digested vector and targeted ADP1 fragment were ligated at 16°C to generate pET28a-GFP-ADP1 recombinant expression vector. The pET28a-GFP-ADP1 and pET28a-GFP plasmids were identified by PCR using specific primers P1-P2 and P1-P4, respectively, and then transformed into E. coli BL21 (DE3) for expression. After 6 h of IPTG (Takara, Japan) induction, cell lysates were subjected to 12% SDS-PAGE analysis. Then, Western blot analysis was performed by using the mouse anti-reADP1 antibody as the primary antibody and HRP-labeled goat anti-mouse antibody (Abcam, USA) as the secondary antibody. The expressed recombinant proteins reADP1-GFP and reGFP were purified using Ni-NTA Spin Kit (Qiagen, Germany) according to the instructions provided by the manufacturer, concentrated with millipore ultrafiltration system (Amicon, USA) and adjusted to 1 mg/mL 0.01 M PBS, pH 7.2 solution for future use.

 

Analysis of interactions between reADP1-GFP and nematode

 

Briefly, the infective larva of Caenorhabditis elegans and Haemonchus contortus were prepared as suspensions of 2000 nematodes per mL. Then, 1 mL of the larval suspension of C. elegans and H. contortus were incubated with 1 mL of reADP1-GFP, GFP, bovine serum albumin (BSA) and trypsin-treated reADP1-GFP at 25°C for 1 h, respectively. Then, 200 μL of each mixture was taken out and centrifuged at 6000 rpm for 1 min and the collected nematodes were washed with 0.01 M PBS, pH 7.2 for 6 times to be observed under a fluorescent microscope.

 

Effects of anti-ADP1 antibody on the nematode-trapping activity of A. oligospora

 

The hyphae were transferred to corn meal agar (CMA) solid medium (17 g corn meal, 10 g agar and 2 g K2 HPO4 in 1 L of water, adjusted to pH 7 using 1 M NaOH) containing 0.2% rabbit anti-A. oligospora serum, and cultured at 26°C in light-free condition. After 3 days of culture, larval suspension (100 strips) of H. contortus was added to the plate. The traps and captured nematodes were counted under a light microscope after 12, 24, 36 and 48 h, respectively. The numbers of traps and captured nematodes were calculated according to the references (Zhao et al. 2014; Zhang et al. 2017).

 

Statistical analyses

 

Statistical analyses were conducted using S.A.S. software Version 9.1 (S.A.S. Institute, Inc., Cary, NC, USA). A comparison of the number of captured nematode between different groups was performed using the Chi-square test. The values of P < 0.05 were considered as statistically significant, while P < 0.01 as an extremely significant difference.

Results

 

cDNA of ADP1 gene amplified from A. oligospora by RT-PCR was about 500 bp (Fig. 1). The sequencing results showed that the complete length of ADP1 gene was 468 bp, which encoded 155 amino acids (Fig. 2). The sequences of ADP1 gene from A. oligospora XJ-A1 strain had been submitted to GenBank under accession numbers MT995855. The ADP1 gene shared 96.37% identities in nucleotide and 94.19% identities in amino acid, respectively, when it was compared with the corresponding gene (AOL_s00210g23) of A. oligospora deposited in GenBank. The ADP1 protein did contain signal peptide but owned a transmembrane region at amino acids 93-115 of this protein. Analysis of SWISS-MODEL software revealed that ADP1 formed a cylindrical tertiary structure (Fig. 3).

The recombinant GFP-ADP1 (reADP1-GFP) and recombinant GFP (reGFP) proteins expressed in pET28a-GFP-ADP and pET28a-GFP transformed E. coli DE3 strain after 6 h of induction with IPTG, showed the expected sizes of 50 kDa and 30 kDa, respectively (Fig. 4 and 5) on SDS-PAGE. Western blot analysis showed that the expressed 50 kDa recombinant protein could interact with rabbit anti-ADP1 serum, confirming the successful expression of reADP1-GFP (Fig. 2 and 4). SDS-PAGE analysis showed that the reADP1-GFP and reGFP purified with Ni-NTA affinity column had very high purity (Table 1; Fig. 5).

The collected C. elegans and H. contortus after incubation with purified reADP1-GFP for 1 h at 25°C showed green fluorescence on their surface, whereas those incubated with reGFP and BSA showed no green fluorescence on their surface under a fluorescence microscope (Fig. 6), confirming that only reADP1-GFP has adhesion activity on nematode surface. In contrast, reADP1-GFP treated by trypsin lost its adhesion activity to the surface of nematode when compared to reADP1-GFP group, while PBS-treated reADP1-GFP did not reduce its adhesion activity to nematode (Fig. 6).

A. oligospora treated by anti-reADP1-GFP serum in the experimental group could produce three dimensional nets and capture nematodes as control group (Fig. 7A-D). Compared with the control group, there was no significant differences in the numbers of trap devices between experimental and control group (P > 0.05) (Fig. 7E). However, when treated by anti-reADP1-GFP serum for 48 h, the numbers of captured nematodes of A. oligospora treated by anti-reADP1-GFP serum in the experimental group was significantly lower than that in the control group (P < 0.05) (Fig. 7F), which suggested that the nematode-trapping activity of A. oligospora could be inhibited by anti-ADP1 serum.

 

Discussion

 

Table 1: List of primer sequences used in this study

 

Primer name

Nucleotide sequence

 (5’→ 3’)

Target gene

Product size (bp)

P1

CCGGAATTCATGTGTAAACCCTTCGAAATCG

ADP1

468

P1

CCCAAGCTTTCATTTGACTTCATTAAGCTGCC

P3

atgagtaaag gagaagaacttttcac

GFP

714

P4

TTTGTGTCCAAGAATGTTTCCATC

Note: The underlined sequences in P1 and P2 are the restriction sites of endonucleases EcoRI and Hind III, respectively

 

 

Fig. 1: Amplification of ADP1 gene of Arthrobotrys oligospora by RT-PCR

M: DNA marker (DL-2000), Lanes 1-3: RT-PCR products of ADP1 gene

 

 

Fig. 2: Nucleotide sequence and amino acids of ADP1 protein

Note: The different amino acids were underlined; the amino acids constituting transmembrane region were shadowed

 

As a model of NTF, A. oligospora enters the parasitic stage by forming complex three-dimensional networks to trap nematodes (Zhao et al. 2014). The trapping initiates a series of processes including adhesion, penetration, and immobilization of nematodes (Tunlid et al. 1994; Ahman et al. 1996; Minglian et al. 2004; Nordbring-Hertz et al. 2006; Yang et al. 2013; Liang et al. 2015; Liu et al. 2020). Adhesion is a premise for NTF preying nematodes. The research has shown that the adhesion process of NTF on C. elegans is a complex process requiring participation of carbohydrates, proteins, as well as their complexes and other substances (Tunlid and Jansson 1992). Nordbring-Hertz et al. (2006) found that there were adhesion

 

Fig. 3: Schematic diagram of molecular characteristics of ADP1 protein of Arthrobotrys oligospora

A: Outside, transmembrane and inside regions of ADP1 protein

B: Tertiary structure of ADP1 protein

Note: R1: Outside region of membrane; R2: Transmembrane region; R3: Inside region of membrane

 

 

Fig. 4: SDS-PAGE and western blot analysis of the reADP1-GFP and reGFP

M: Standard protein marker (97.4, 66.2, 43.0,31.0, 20.1 kDa); Lanes 1 and 2: Cell lysates of pET28a-GFP-ADP1 transformed E. coli after induced with IPTG for 4 and 6 hours, respectively

Lanes 3 and 7: Cell lysates of pET28a transformed E. coli after induced with IPTG for 4 and 6 hours, respectively; Lanes 4, 5 and 6: Cell lysates of pET28a-GFP transformed E. coli after induced with IPTG

 

 

Fig. 5: SDS-PAGE and Western blot analysis of the reADP1-GFP and reGFP

M: Standard protein marker (120.0, 85.0, 50.0, 35.0, 25.0, 20.0 kDa)

1: Purified reGFP protein

2: Purified reADP1-GFP protein

3: Western blot analysis of reADP1-GFP protein

 

Fig. 6: Analysis of interaction of reADP1-GFP with nematodes

A: reADP1-GFP interacts with C. elegans

B: reADP1-GFP interacts with H. contortus

C: BSA interacts with H. contortus

D: Trypsin treated reADP1-GFP interacts with H. contortus

E: PBS treated reADP1-GFP interacts with H. contortus

F: reADP1-GFP interacts with H. contortus

 

 

Fig. 7: Effects of anti-reADP1-GFP serum on the nematode-trapping activity of A. oligospora

A-D: The trap devices in 12 h, 24 h, 36 h and 48 h post-induction of larval suspension of H. contortus

E: The numbers of trap devices; F: The numbers of captured nematodes

 


substances between NTF and nematodes and confirmed that adhesion substances contain lectin. Meerupati et al. (2013) revealed that certain proteins also play important roles in the adhesion process. Yang et al. (2011) conducted whole genome analysis of A. oligospora and predicted that 17 genes were related to adhesion, among which, five genes were upregulated during the formation of their predatory organs, suggesting that some proteins may play important roles in the process of A. oligospora adhering to nematode (Yang et al. 2011). However, to date, the active adhesion substances produced by NTF and their underlying molecular mechanisms for adhesion are still incompletely understood (Meerupati et al. 2013; Liang et al. 2013).

Based on the studies on genomics and proteomics of A. oligospora, many new functional proteins have been identified and characterized (Li et al. 2016, 2017; Liang et al. 2017; Xie et al. 2019; Yang et al. 2018 Zhang et al. 2019). To better understand the biological functions of ADP1, interactions between A. oligospora ADP1 and nematode were conducted. The results revealed that the reADP1-GFP protein could adhere to the surface of nematode and was unable to be washed away by elution buffer, suggesting that ADP1 has adhesion function to nematodes. Furthermore, we confirmed that ADP1 displayed stronger adhesion at 25°C, which is in consistence with the natural environment of fungi, suggesting production of ADP1 may be an environmental adaptability of fungi in the evolutionary process to form a favorable environment for its predation under natural conditions. In addition, trypsin digestion could block the adhesion ability of reADP1-GFP protein to nematode, while PBS did not affect its adhesion activity to the surface of nematode, which suggests that this novel protein ADP1 is involved in an adhesion role. The nematode-trapping activity of A. oligospora inhibited by anti-ADP1-GFP serum further confirmed that the ADP1 protein was closely related to nematode-trapping process.

 

Conclusion

 

A. oligospora ADP1 exerts an important role in the process of fungal adherence to nematodes, which provides new insights into our understanding of the molecular mechanisms of NTF preying nematodes.

 

Acknowledgments

 

This work was supported by National Natural Science Foundation of China (32060801 and 31460654) and National Key Research and Development Program (No. 2017YFD0501200). The authors thank the staff for providing the materials for this study.

This work was supported by National Natural Science Foundation of China (32060801, 31460654), National Key Research and Development Program (No. 2017YFD0501200).

 

Author Contributions

 

Li Jie and Meng Qingling planned and designed the whole study. Chen Shuangqing, Li zhiyuan, Wang Lixia, Shang Yunxia, Gong Shasha, Xiao Chencheng, Zhang Kai performed and completed the experiments. Li Jie, Qiao Jun and Meng Qingling wrote the manuscript. Zhang Xingxing and Cai Xuepeng reviewed and revised the manuscript. All authors read and approved the final manuscript.

 

Conflict of Interest

 

This manuscript has not been simultaneously submitted for publication in another journal and been approved by all co-authors. The authors declare that they do not have any conflict of interest.

 

Data Availability

 

Data presented in this study are available on fair request to the corresponding author.

 

Ethics Approval

 

The experiments were carried out in accordance with the guidelines issued by the Ethical Committee of Shihezi University.

 

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